Simm D, Hatje K, Kollmar M (2017)
Distribution and evolution of stable single α-helices (SAH domains) in myosin motor proteins.
PLoS One 12, e0174639

Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, McGaughran A, Oakeshott JG, Papanikolaou A, Perera OP, Rane RV, Richards S, Tay WT, Walsh TK, Anderson A, Anderson CJ, Asgari S, Board PG, Bretschneider A, Campbell PM, Chertemps T, Christeller JT, Coppin CW, Downes SJ, Duan G, Farnsworth CA, Good RT, Han LB, Han YC, Hatje K, Horne I, Huang YP, Hughes DST, Jacquin-Joly E, James W, Jhangiani S, Kollmar M, Kuwar SS, Li S, Liu NY, Maibeche MT, Miller JR, Montagne N, Perry T, Qu J, Song SV, Sutton GG, Vogel H, Walenz BP, Xu W, Zhang HJ, Zou Z, Batterham P, Edwards OR, Feyereisen R, Gibbs RA, Heckel DG, McGrath A, Robin C, Scherer SE, Worley KC, Wu YD (2017)
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.
BMC Biology 15, 63

Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M (2017)
The landscape of human mutually exclusive splicing.
Molecular Systems Biology 13, 959

Simm D, Hatje K, Kollmar M (2015)
Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains).
Bioinformatics 31, 767-769

Hatje K, Kollmar M (2014)
Kassiopeia: A database and web application for the analysis of mutually exclusive exomes of eukaryotes.
BMC Genomics 15, 115

Kollmar M, Hatje K (2014)
Shared gene structures and clusters of mutually exclusive spliced exons within the metazoan muscle myosin heavy chain genes.
PLoS One 9, e88111

Horwege S, Lindner S, Boden S, Hatje K, Kollmar M, Leimeister C-A, Morgenstern B (2014)
Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches.
Nucleic Acids Research 42, W7-11

Hatje K, Hammesfahr B, Kollmar M (2013)
WebScipio: reconstructing alternative splice variants of eukaryotic proteins.
Nucleic Acids Research 41, W504-W509

Hatje K, Kollmar M (2013)
Expansion of the mutually exclusive spliced exome in Drosophila.
Nature Communications 4, 2460

Hatje K, Kollmar M (2012)
A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method.
Frontiers in Plant Science 3, 192

Hatje K, Keller O, Hammesfahr B, Pillmann H, Waack S, Kollmar M (2011)
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.
BMC Research Notes 4, 265

Pillmann H, Hatje K, Odronitz F, Hammesfahr B, Kollmar M (2011)
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.
BMC Bioinformatics 12, 270

Hatje K, Kollmar M (2011)
Predicting tandemly arrayed gene duplicates with WebScipio.
Gene duplication, 59-76