bio = { infor: matics } @kollmar_group
Björn Hammesfahr, Alumnus
PostDoc
Genomics and Phylogeny of Cytoskeletal Proteins: Tools and Analyses
Department of NMR Based Structural Biology, Max-Planck Institute for Biophysical Chemistry, Göttingen
from Dec 2012 to Mar 2013

Doktorarbeit
Genomics and Phylogeny of Cytoskeletal Proteins: Tools and Analyses
Göttingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences (GGNB), Georg-August-Universität Göttingen, and Department of NMR Based Structural Biology, Max-Planck Institute for Biophysical Chemistry, Göttingen
from Apr 2009 to Nov 2012

Publications

Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M (2017)
The landscape of human mutually exclusive splicing.
Molecular Systems Biology 13, 959
Kollmar M, Kollmar L, Hammesfahr B, Simm D (2015)
diArk – the database for eukaryotic genome and transcriptome assemblies in 2014.
Nucleic Acids Research 43, D1107-1112
Schneider R, Odronitz F, Hammesfahr B, Hellkamp M, Kollmar M (2013)
Peakr: Simulating solid-state NMR spectra of proteins.
Bioinformatics 29, 1134-1140
Hammesfahr B, Odronitz F, Mühlhausen S, Waack, S, Kollmar M (2013)
GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.
BMC Bioinformatics 14, 77
Hatje K, Hammesfahr B, Kollmar M (2013)
WebScipio: reconstructing alternative splice variants of eukaryotic proteins.
Nucleic Acids Research 41, W504-W509
Mazur A, Hammesfahr B, Griesinger C, Lee D, Kollmar M (2013)
ShereKhan—calculating exchange parameters in relaxation dispersion data from CPMG experiments.
Bioinformatics 29, 1819-1820
Hammesfahr B, Kollmar M (2012)
Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein.
BMC Evolutionary Biology 12, 95
Hatje K, Keller O, Hammesfahr B, Pillmann H, Waack S, Kollmar M (2011)
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.
BMC Research Notes 4, 265
Pillmann H, Hatje K, Odronitz F, Hammesfahr B, Kollmar M (2011)
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.
BMC Bioinformatics 12, 270
Hammesfahr B, Odronitz F, Hellkamp M, Kollmar M (2011)
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data.
BMC Research Notes 4, 338
Eckert C, Hammesfahr B, Kollmar M (2011)
A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function.
BMC Evolutionary Biology 11, 268